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Dear {NAME},
Please join us for our upcoming webinar highlighting Enzymatic solutions for overcoming the challenges of FFPE DNA in NGS library prep. [Register Today!]( Enzymatic solutions for overcoming the challenges of FFPE DNA in NGS library prep Tuesday, February 27th 1:00 PM EST In cancer genomics, a common source of DNA is formalin-fixed, paraffin-embedded (FFPE) tissue from patient surgical samples, where in most cases high quality fresh or frozen tissue samples are not available. FFPE DNA poses many notable challenges for preparing NGS libraries, including low input amounts and highly variable damage from fixation, storage, and extraction methods. We developed a new DNA damage repair enzyme mix, enzymatic fragmentation mix, and library amplification PCR master mix, optimizing the activities of these mixes using FFPE DNA samples of varied quality to maximize yield, WGS library quality, and target enrichment library performance. This new suite of enzyme mixes allows even highly damaged FFPE samples to achieve high-quality libraries with sufficient input for hybrid capture. Increasing the useable reads and coverage enables robust detection of somatic variants as demonstrated using both reference standard DNA and patient-derived FFPE samples. The use of enzymatic fragmentation and a flexible PCR master mix make this FFPE library prep workflow compatible with high-throughput and automation-based workflows. Maggie Heider Development Associate
Maggie Heider received her B.A. in Biology from the College of the Holy Cross and her Ph.D. from the University of Massachusetts Medical School. Her graduate work focused on characterizing the protein complexes that regulate intracellular membrane trafficking and developing novel tools and assays to study their activity. Upon joining NEB in 2016, she switched her focus to enzymology and has spent the last several years developing NGS library preparation reagents and workflows including DNA library prep kits, enzymatic DNA repair, enzymatic fragmentation, PCR reagents, and multiplex oligos. Her recent focus is on developing reagents and workflows for clinical sample types, particularly FFPE DNA samples.
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