PNAS Table of Contents for April 28, 2020; Vol. 117, No. 17

[PNAS] [Cozz Prize winners 2019](/cgi/adclick/?ad=54883&adclick=true&url=https%3A%2F%2Fwww.pnas.org%2Fpage%2Fabout%2Fcozzarelli-prize)   [April 28, 2020; Vol. 117, No. 17]( ) This Week in PNAS [In This Issue]( --------------------------------------------------------------- Editorial [On Mr. Hyslop’s prediction, content archives, and preprint servers]( May R. Berenbaum --------------------------------------------------------------- Inner Workings [Inner Workings: Microbiota munch on medications, causing big effects on drug activity]( Jyoti Madhusoodanan An over-the-shoulder look at scientists at work. --------------------------------------------------------------- Retrospective [Frank Press, A life of magnitude]( Thomas H. Jordan --------------------------------------------------------------- Profile [Profile of Paul L. McEuen]( Farooq Ahmed --------------------------------------------------------------- Commentaries [Transposable elements teach T cells new tricks]( Atma Ivancevic and Edward Boyi Chuong [Proresolving lipid mediators enhance PMN-mediated bacterial clearance]( Lucy V. Norling and Mauro Perretti [Ancient aquaculture and the rise of social complexity]( Scott M. Fitzpatrick [Phosphoinositides regulate chloroplast processes]( Michael Schroda --------------------------------------------------------------- Perspective [Cavitation in soft matter]( Christopher W. Barney, Carey E. Dougan, Kelly R. McLeod, Amir Kazemi-Moridani, Yue Zheng, Ziyu Ye, Sacchita Tiwari, Ipek Sacligil, Robert A. Riggleman, Shengqiang Cai, Jae-Hwang Lee, Shelly R. Peyton, Gregory N. Tew, and Alfred J. Crosby --------------------------------------------------------------- Letters [Simulation model for kinship structures is ethnographically invalid]( Dwight W. Read and Robert Parkin [Reply to Read and Parkin: Our model correctly expresses the ethnographic nature of the cultural incest taboo and kinship structures]( Kenji Itao and Kunihiko Kaneko [Mischaracterization of bison migratory patterns in Yellowstone National Park: Consequences for the Green Wave Hypothesis]( Joseph M. Craine [Reply to Craine: Bison redefine what it means to move to find food]( Chris Geremia, Jerod A. Merkle, P. J. White, Mark Hebblewhite, and Matthew J. Kauffman --------------------------------------------------------------- Brief Report [Noninvasive hippocampal blood−brain barrier opening in Alzheimer’s disease with focused ultrasound]( Ali R. Rezai, Manish Ranjan, Pierre-François D’Haese, Marc W. Haut, Jeffrey Carpenter, Umer Najib, Rashi I. Mehta, J. Levi Chazen, Zion Zibly, Jennifer R. Yates, Sally L. Hodder, and Michael Kaplitt --------------------------------------------------------------- Physical Sciences Applied Mathematics [A machine learning framework for solving high-dimensional mean field game and mean field control problems]( Lars Ruthotto, Stanley J. Osher, Wuchen Li, Levon Nurbekyan, and Samy Wu Fung Applied Physical Sciences [Microscopic sensors using optical wireless integrated circuits]( Alejandro J. Cortese, Conrad L. Smart, Tianyu Wang, Michael F. Reynolds, Samantha L. Norris, Yanxin Ji, Sunwoo Lee, Aaron Mok, Chunyan Wu, Fei Xia, Nathan I. Ellis, Alyosha C. Molnar, Chris Xu, and Paul L. McEuen Biophysics and Computational Biology [Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity]( Jolien Wolbert, Xiaolin Li, Michael Heming, Anne K. Mausberg, Dagmar Akkermann, Clara Frydrychowicz, Robert Fledrich, Linda Groeneweg, Christian Schulz, Mark Stettner, Noelia Alonso Gonzalez, Heinz Wiendl, Ruth Stassart, and Gerd Meyer zu Hörste [The microcircuits of striatum in silico]( J. J. Johannes Hjorth, Alexander Kozlov, Ilaria Carannante, Johanna Frost Nylén, Robert Lindroos, Yvonne Johansson, Anna Tokarska, Matthijs C. Dorst, Shreyas M. Suryanarayana, Gilad Silberberg, Jeanette Hellgren Kotaleski, and Sten Grillner Chemistry [Electrochemically scrambled nanocrystals are catalytically active for CO2-to-multicarbons]( Yifan Li, Dohyung Kim, Sheena Louisia, Chenlu Xie, Qiao Kong, Sunmoon Yu, Tom Lin, Shaul Aloni, Sirine C. Fakra, and Peidong Yang [Reactivity oscillation in the heavy–light–heavy Cl + CH4 reaction]( Zhen Chen, Jun Chen, Rongjun Chen, Ting Xie, Xingan Wang, Shu Liu, Guorong Wu, Dongxu Dai, Xueming Yang, and Dong H. Zhang [A multiproducer microbiome generates chemical diversity in the marine sponge Mycale hentscheli]( Michael Rust, Eric J. N. Helfrich, Michael F. Freeman, Pakjira Nanudorn, Christopher M. Field, Christian Rückert, Tomas Kündig, Michael J. Page, Victoria L. Webb, Jörn Kalinowski, Shinichi Sunagawa, and Jörn Piel Computer Sciences [The complexity of human computation via a concrete model with an application to passwords]( Manuel Blum and Santosh Vempala Earth, Atmospheric, and Planetary Sciences [Large and projected strengthening moisture limitation on end-of-season photosynthesis]( Yao Zhang, Nicholas C. Parazoo, A. Park Williams, Sha Zhou, and Pierre Gentine Engineering [Holographic virtual staining of individual biological cells]( Yoav N. Nygate, Mattan Levi, Simcha K. Mirsky, Nir A. Turko, Moran Rubin, Itay Barnea, Gili Dardikman-Yoffe, Miki Haifler, Alon Shalev, and Natan T. Shaked Physics [Electron temperature of the solar wind]( Stanislav Boldyrev, Cary Forest, and Jan Egedal [Confidence collapse in a multihousehold, self-reflexive DSGE model]( Federico Guglielmo Morelli, Michael Benzaquen, Marco Tarzia, and Jean-Philippe Bouchaud --------------------------------------------------------------- Social Sciences Anthropology [Phylogenetic network analysis of SARS-CoV-2 genomes]( Peter Forster, Lucy Forster, Colin Renfrew, and Michael Forster Economic Sciences [Confidence collapse in a multihousehold, self-reflexive DSGE model]( Federico Guglielmo Morelli, Michael Benzaquen, Marco Tarzia, and Jean-Philippe Bouchaud [Impact of Xylella fastidiosa subspecies pauca in European olives]( Kevin Schneider, Wopke van der Werf, Martina Cendoya, Monique Mourits, Juan A. Navas-Cortés, Antonio Vicent, and Alfons Oude Lansink Psychological and Cognitive Sciences [Social, psychological, and demographic characteristics of dehumanization toward immigrants]( David M. Markowitz and Paul Slovic [Neuroticism may not reflect emotional variability]( Elise K. Kalokerinos, Sean C. Murphy, Peter Koval, Natasha H. Bailen, Geert Crombez, Tom Hollenstein, John Gleeson, Renee J. Thompson, Dimitri M. L. Van Ryckeghem, Peter Kuppens, and Brock Bastian Social Sciences [Rising between-workplace inequalities in high-income countries]( Donald Tomaskovic-Devey, Anthony Rainey, Dustin Avent-Holt, Nina Bandelj, István Boza, David Cort, Olivier Godechot, Gergely Hajdu, Martin Hällsten, Lasse Folke Henriksen, Are Skeie Hermansen, Feng Hou, Jiwook Jung, Aleksandra Kanjuo-Mrčela, Joe King, Naomi Kodama, Tali Kristal, Alena Křížková, Zoltán Lippényi, Silvia Maja Melzer, Eunmi Mun, Andrew Penner, Trond Petersen, Andreja Poje, Mirna Safi, Max Thaning, and Zaibu Tufail [The Diversity–Innovation Paradox in Science]( Bas Hofstra, Vivek V. Kulkarni, Sebastian Munoz-Najar Galvez, Bryan He, Dan Jurafsky, and Daniel A. McFarland --------------------------------------------------------------- Biological Sciences Agricultural Sciences [Impact of Xylella fastidiosa subspecies pauca in European olives]( Kevin Schneider, Wopke van der Werf, Martina Cendoya, Monique Mourits, Juan A. Navas-Cortés, Antonio Vicent, and Alfons Oude Lansink [The AMPK-PP2A axis in insect fat body is activated by 20-hydroxyecdysone to antagonize insulin/IGF signaling and restrict growth rate]( Dongwei Yuan, Shun Zhou, Suning Liu, Kang Li, Haigang Zhao, Shihui Long, Hanhan Liu, Yongfang Xie, Yunlin Su, Fengwei Yu, and Sheng Li Applied Biological Sciences [Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440]( Davinia Salvachúa, Allison Z. Werner, Isabel Pardo, Martyna Michalska, Brenna A. Black, Bryon S. Donohoe, Stefan J. Haugen, Rui Katahira, Sandra Notonier, Kelsey J. Ramirez, Antonella Amore, Samuel O. Purvine, Erika M. Zink, Paul E. Abraham, Richard J. Giannone, Suresh Poudel, Philip D. Laible, Robert L. Hettich, and Gregg T. Beckham Biochemistry [ZNF263 is a transcriptional regulator of heparin and heparan sulfate biosynthesis]( Ryan J. Weiss, Philipp N. Spahn, Alejandro Gómez Toledo, Austin W. T. Chiang, Benjamin P. Kellman, Jing Li, Christopher Benner, Christopher K. Glass, Philip L. S. M. Gordts, Nathan E. Lewis, and Jeffrey D. Esko [Alkyltransferase-like protein clusters scan DNA rapidly over long distances and recruit NER to alkyl-DNA lesions]( Natascha Rill, Ann Mukhortava, Sonja Lorenz, and Ingrid Tessmer [Rcf2 revealed in cryo-EM structures of hypoxic isoforms of mature mitochondrial III-IV supercomplexes]( Andrew M. Hartley, Brigitte Meunier, Nikos Pinotsis, and Amandine Maréchal [RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair–π and CH–π interactions]( Juntaek Oh, Aaron M. Fleming, Jun Xu, Jenny Chong, Cynthia J. Burrows, and Dong Wang [A common coupling mechanism for A-type heme-copper oxidases from bacteria to mitochondria]( Amandine Maréchal, Jing-Yang Xu, Naho Genko, Andrew M. Hartley, Francis Haraux, Brigitte Meunier, and Peter R. Rich [Vip1 is a kinase and pyrophosphatase switch that regulates inositol diphosphate signaling]( D. Eric Dollins, Wenli Bai, Peter C. Fridy, James C. Otto, Julie L. Neubauer, Samuel G. Gattis, Kavi P. M. Mehta, and John D. York Biophysics and Computational Biology [Determining the correct stoichiometry of Kv2.1/Kv6.4 heterotetramers, functional in multiple stoichiometrical configurations]( Lena Möller, Glenn Regnier, Alain J. Labro, Rikard Blunck, and Dirk J. Snyders [Curling of epithelial monolayers reveals coupling between active bending and tissue tension]( Jonathan Fouchard, Tom P. J. Wyatt, Amsha Proag, Ana Lisica, Nargess Khalilgharibi, Pierre Recho, Magali Suzanne, Alexandre Kabla, and Guillaume Charras [Structural and kinetic basis for the regulation and potentiation of Hsp104 function]( Xiang Ye, JiaBei Lin, Leland Mayne, James Shorter, and S. Walter Englander Developmental Biology [Spermatozoa lacking Fertilization Influencing Membrane Protein (FIMP) fail to fuse with oocytes in mice]( Yoshitaka Fujihara, Yonggang Lu, Taichi Noda, Asami Oji, Tamara Larasati, Kanako Kojima-Kita, Zhifeng Yu, Ryan M. Matzuk, Martin M. Matzuk, and Masahito Ikawa [JNK-dependent intestinal barrier failure disrupts host–microbe homeostasis during tumorigenesis]( Jun Zhou and Michael Boutros [CD93 negatively regulates astrogenesis in response to MMRN2 through the transcriptional repressor ZFP503 in the developing brain]( Qingli Liang, Libo Su, Dongming Zhang, and Jianwei Jiao Ecology [Viral zoonotic risk is homogenous among taxonomic orders of mammalian and avian reservoir hosts]( Nardus Mollentze and Daniel G. Streicker Evolution [Evolution of male pregnancy associated with remodeling of canonical vertebrate immunity in seahorses and pipefishes]( Olivia Roth, Monica Hongrø Solbakken, Ole Kristian Tørresen, Till Bayer, Michael Matschiner, Helle Tessand Baalsrud, Siv Nam Khang Hoff, Marine Servane Ono Brieuc, David Haase, Reinhold Hanel, Thorsten B. H. Reusch, and Sissel Jentoft Genetics [Analysis of APOBEC-induced mutations in yeast strains with low levels of replicative DNA polymerases]( Yang Sui, Lei Qi, Ke Zhang, Natalie Saini, Leszek J. Klimczak, Cynthia J. Sakofsky, Dmitry A. Gordenin, Thomas D. Petes, and Dao-Qiong Zheng [RepeatModeler2 for automated genomic discovery of transposable element families]( Jullien M. Flynn, Robert Hubley, Clément Goubert, Jeb Rosen, Andrew G. Clark, Cédric Feschotte, and Arian F. Smit [Evolutionary history of modern Samoans]( Daniel N. Harris, Michael D. Kessler, Amol C. Shetty, Daniel E. Weeks, Ryan L. Minster, Sharon Browning, Ethan E. Cochrane, Ranjan Deka, Nicola L. Hawley, Muagututi‘a Sefuiva Reupena, Take Naseri, Trans-Omics for Precision Medicine (TOPMed) Consortium, TOPMed Population Genetics Working Group, Stephen T. McGarvey, and Timothy D. O’Connor Immunology and Inflammation [Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity]( Jolien Wolbert, Xiaolin Li, Michael Heming, Anne K. Mausberg, Dagmar Akkermann, Clara Frydrychowicz, Robert Fledrich, Linda Groeneweg, Christian Schulz, Mark Stettner, Noelia Alonso Gonzalez, Heinz Wiendl, Ruth Stassart, and Gerd Meyer zu Hörste [Resolvin E1 is a pro-repair molecule that promotes intestinal epithelial wound healing]( Miguel Quiros, Darius Feier, Dorothee Birkl, Rachit Agarwal, Dennis W. Zhou, Andrés J. García, Charles A. Parkos, and Asma Nusrat Medical Sciences [Frailty markers comprise blood metabolites involved in antioxidation, cognition, and mobility]( Masahiro Kameda, Takayuki Teruya, Mitsuhiro Yanagida, and Hiroshi Kondoh [Effectiveness of convalescent plasma therapy in severe COVID-19 patients]( Kai Duan, Bende Liu, Cesheng Li, Huajun Zhang, Ting Yu, Jieming Qu, Min Zhou, Li Chen, Shengli Meng, Yong Hu, Cheng Peng, Mingchao Yuan, Jinyan Huang, Zejun Wang, Jianhong Yu, Xiaoxiao Gao, Dan Wang, Xiaoqi Yu, Li Li, Jiayou Zhang, Xiao Wu, Bei Li, Yanping Xu, Wei Chen, Yan Peng, Yeqin Hu, Lianzhen Lin, Xuefei Liu, Shihe Huang, Zhijun Zhou, Lianghao Zhang, Yue Wang, Zhi Zhang, Kun Deng, Zhiwu Xia, Qin Gong, Wei Zhang, Xiaobei Zheng, Ying Liu, Huichuan Yang, Dongbo Zhou, Ding Yu, Jifeng Hou, Zhengli Shi, Saijuan Chen, Zhu Chen, Xinxin Zhang, and Xiaoming Yang [Unbiased proteomics identifies plasminogen activator inhibitor-1 as a negative regulator of endothelial nitric oxide synthase]( Victor Garcia, Eon Joo Park, Mauro Siragusa, Florian Frohlich, Mohammad Mahfuzul Haque, Jonathan V. Pascale, Katherine R. Heberlein, Brant E. Isakson, Dennis J. Stuehr, and William C. Sessa Microbiology [A multiproducer microbiome generates chemical diversity in the marine sponge Mycale hentscheli]( Michael Rust, Eric J. N. Helfrich, Michael F. Freeman, Pakjira Nanudorn, Christopher M. Field, Christian Rückert, Tomas Kündig, Michael J. Page, Victoria L. Webb, Jörn Kalinowski, Shinichi Sunagawa, and Jörn Piel [The E. coli transcription factor GrlA is regulated by subcellular compartmentalization and activated in response to mechanical stimuli]( Natalie Sirisaengtaksin, Max A. Odem, Rachel E. Bosserman, Erika M. Flores, and Anne Marie Krachler [Infectious KoRV-related retroviruses circulating in Australian bats]( Joshua A. Hayward, Mary Tachedjian, Claudia Kohl, Adam Johnson, Megan Dearnley, Brianna Jesaveluk, Christine Langer, Philip D. Solymosi, Georg Hille, Andreas Nitsche, Cecilia A. Sánchez, Adam Werner, Dimitri Kontos, Gary Crameri, Glenn A. Marsh, Michelle L. Baker, Pantelis Poumbourios, Heidi E. Drummer, Edward C. Holmes, Lin-Fa Wang, Ina Smith, and Gilda Tachedjian [PSGL-1 restricts HIV-1 infectivity by blocking virus particle attachment to target cells]( Yajing Fu, Sijia He, Abdul A. Waheed, Deemah Dabbagh, Zheng Zhou, Benjamin Trinité, Zhao Wang, Jieshi Yu, Dan Wang, Feng Li, David N. Levy, Hong Shang, Eric O. Freed, and Yuntao Wu [The type IV pilin PilA couples surface attachment and cell-cycle initiation in Caulobacter crescentus]( Luca Del Medico, Dario Cerletti, Philipp Schächle, Matthias Christen, and Beat Christen Neuroscience [The microcircuits of striatum in silico]( J. J. Johannes Hjorth, Alexander Kozlov, Ilaria Carannante, Johanna Frost Nylén, Robert Lindroos, Yvonne Johansson, Anna Tokarska, Matthijs C. Dorst, Shreyas M. Suryanarayana, Gilad Silberberg, Jeanette Hellgren Kotaleski, and Sten Grillner [Dynamic coupling of whole-brain neuronal and neurotransmitter systems]( Morten L. Kringelbach, Josephine Cruzat, Joana Cabral, Gitte Moos Knudsen, Robin Carhart-Harris, Peter C. Whybrow, Nikos K. Logothetis, and Gustavo Deco [A retinal circuit for the suppressed-by-contrast receptive field of a polyaxonal amacrine cell]( Yu Jia, Seunghoon Lee, Yehong Zhuo, and Z. Jimmy Zhou [Cytokinesis and postabscission midbody remnants are regulated during mammalian brain development]( Katrina C. McNeely and Noelle D. Dwyer [Seasonal changes in NRF2 antioxidant pathway regulates winter depression-like behavior]( Tomoya Nakayama, Kousuke Okimura, Jiachen Shen, Ying-Jey Guh, T. Katherine Tamai, Akiko Shimada, Souta Minou, Yuki Okushi, Tsuyoshi Shimmura, Yuko Furukawa, Naoya Kadofusa, Ayato Sato, Toshiya Nishimura, Minoru Tanaka, Kei Nakayama, Nobuyuki Shiina, Naoyuki Yamamoto, Andrew S. Loudon, Taeko Nishiwaki-Ohkawa, Ai Shinomiya, Toshitaka Nabeshima, Yusuke Nakane, and Takashi Yoshimura [Distinct locomotor precursors in newborn babies]( Francesca Sylos-Labini, Valentina La Scaleia, Germana Cappellini, Adele Fabiano, Simonetta Picone, Elena S. Keshishian, Dmitry S. Zhvansky, Piermichele Paolillo, Irina A. Solopova, Andrea d’Avella, Yury Ivanenko, and Francesco Lacquaniti Plant Biology [Pathogen manipulation of chloroplast function triggers a light-dependent immune recognition]( Chuyun Gao, Huawei Xu, Jie Huang, Biying Sun, Fan Zhang, Zachary Savage, Cian Duggan, Tingxiu Yan, Chih-hang Wu, Yuanchao Wang, Vivianne G. A. A. Vleeshouwers, Sophien Kamoun, Tolga O. Bozkurt, and Suomeng Dong [Chitin perception in plasmodesmata characterizes submembrane immune-signaling specificity in plants]( Cécilia Cheval, Sebastian Samwald, Matthew G. Johnston, Jeroen de Keijzer, Andrew Breakspear, Xiaokun Liu, Annalisa Bellandi, Yasuhiro Kadota, Cyril Zipfel, and Christine Faulkner Systems Biology [Robust landscapes of ribosome dwell times and aminoacyl-tRNAs in response to nutrient stress in liver]( Cédric Gobet, Benjamin Dieter Weger, Julien Marquis, Eva Martin, Nagammal Neelagandan, Frédéric Gachon, and Felix Naef --------------------------------------------------------------- Corrections [Correction for Xu et al., Structure of the cell-binding component of the Clostridium difficile binary toxin reveals a di-heptamer macromolecular assembly]( [Correction for Uyhazi et al., Pumilio proteins utilize distinct regulatory mechanisms to achieve complementary functions required for pluripotency and embryogenesis]( [Correction for AbuHammad et al., Regulation of PRMT5–MDM4 axis is critical in the response to CDK4/6 inhibitors in melanoma]( [Cover] --------------------------------------------------------------- This message was sent to {EMAIL}. 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